Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HUVEC_PolII_10 ng/ml_TNF_30min
cell type
Human umbilical vein endothelial cells
passage
within 6 passage
chip antibody
PolII (S2, S5 in CTD were both phosphorylated)

Sequenced DNA Library

library_name
GSM850305: HUVEC_PolII_TNF30min_ChIP seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
16094215
Reads aligned (%)
84.3
Duplicates removed (%)
5.7
Number of peaks
1300 (qval < 1E-05)

hg19

Number of total reads
16094215
Reads aligned (%)
83.5
Duplicates removed (%)
7.0
Number of peaks
1530 (qval < 1E-05)

Base call quality data from DBCLS SRA