Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Others

Cell type

HPdLF

Tissue

epithelium

Description

periodontal ligament fibroblasts

Sample

source_name

HPdLF

biomaterial_provider

Lonza

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseDgf

datatype description

DNase Digital Footprinting

cell

HPdLF

cell organism

human

cell description

periodontal ligament fibroblasts

cell sex

M

labversion

Bowtie 0.12.7

Sequenced DNA Library

library_name

ERROR: cannot retrieve data from NCBI: too many requests

library_strategy

ERROR: cannot retrieve data from NCBI: too many requests

library_source

ERROR: cannot retrieve data from NCBI: too many requests

library_selection

ERROR: cannot retrieve data from NCBI: too many requests

library_construction_protocol

ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model

ERROR: cannot retrieve data from NCBI: too many requests

cycle_sequence

ERROR: cannot retrieve data from NCBI: too many requests

cycle_count

ERROR: cannot retrieve data from NCBI: too many requests

flow_sequence

ERROR: cannot retrieve data from NCBI: too many requests

flow_count

ERROR: cannot retrieve data from NCBI: too many requests

key_sequence

ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads

371416176

Reads aligned (%)

98.0

Duplicates removed (%)

55.8

Number of peaks

223070 (qval < 1E-05)

hg19

Number of total reads

371416176

Reads aligned (%)

97.2

Duplicates removed (%)

57.7

Number of peaks

222408 (qval < 1E-05)