SRX111321
GSM848789: HOXC9 ChIP-seq rep2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HOXC9

Cell type

Cell type Class
Neural
Cell type
BE(2)-C
Primary Tissue
Brain
Site of Extraction
Bone Marrow
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

source_name
BE2C/Tet-Off/HOXC9_Doxy-_6d_HOXC9_ChIP
cell line
BE(2)-C/Tet-Off/Myc-HOXC9
tumor cell type
Neuroblastoma
chip antibody
anti-Myc tag (clone 4A6, Millipore)
tissue origin
Sympathetic nervous system

Sequenced DNA Library

library_name
GSM848789: HOXC9_ChIP-seq_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
37452058
Reads aligned (%)
97.7
Duplicates removed (%)
23.6
Number of peaks
20432 (qval < 1E-05)

hg19

Number of total reads
37452058
Reads aligned (%)
97.0
Duplicates removed (%)
24.7
Number of peaks
20346 (qval < 1E-05)

Base call quality data from DBCLS SRA