Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HOXC9

Cell type

Cell type Class
Neural
Cell type
BE(2)-C
Primary Tissue
Brain
Site of Extraction
Bone Marrow
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

source_name
BE2C/Tet-Off/HOXC9_Doxy-_6d_HOXC9_ChIP
cell line
BE(2)-C/Tet-Off/Myc-HOXC9
tumor cell type
Neuroblastoma
chip antibody
anti-Myc tag (clone 4A6, Millipore)
tissue origin
Sympathetic nervous system

Sequenced DNA Library

library_name
GSM848788: HOXC9_ChIP-seq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
46889451
Reads aligned (%)
146.8
Duplicates removed (%)
20.1
Number of peaks
18113 (qval < 1E-05)

hg38

Number of total reads
46889451
Reads aligned (%)
149.1
Duplicates removed (%)
19.5
Number of peaks
18471 (qval < 1E-05)

Base call quality data from DBCLS SRA