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For hg38
BigWig
Peak-call (q < 1E-05)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: HOXC9
wikigenes
PDBj
CellType: BE(2)-C
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX111320
GSM848788: HOXC9 ChIP-seq rep1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
HOXC9
Cell type
Cell type Class
Neural
Cell type
BE(2)-C
Primary Tissue
Brain
Site of Extraction
Bone Marrow
Tissue Diagnosis
Neuroblastoma
Attributes by original data submitter
Sample
source_name
BE2C/Tet-Off/HOXC9_Doxy-_6d_HOXC9_ChIP
cell line
BE(2)-C/Tet-Off/Myc-HOXC9
tumor cell type
Neuroblastoma
chip antibody
anti-Myc tag (clone 4A6, Millipore)
tissue origin
Sympathetic nervous system
Sequenced DNA Library
library_name
GSM848788: HOXC9_ChIP-seq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
46889451
Reads aligned (%)
92.6
Duplicates removed (%)
19.5
Number of peaks
18471 (qval < 1E-05)
hg19
Number of total reads
46889451
Reads aligned (%)
91.9
Duplicates removed (%)
20.1
Number of peaks
18113 (qval < 1E-05)
Base call quality data from
DBCLS SRA