SRX110938
GSM847245: GCB-H3K4me3-ChIPseq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Human tonsilar germinal center B cells
cell type
Human tonsilar germinal center B cells (CD77+)
chip antibody
H3K4me3

Sequenced DNA Library

library_name
GSM847245: GCB-H3K4me3-ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40308867
Reads aligned (%)
98.4
Duplicates removed (%)
16.1
Number of peaks
18010 (qval < 1E-05)

hg19

Number of total reads
40308867
Reads aligned (%)
97.0
Duplicates removed (%)
17.7
Number of peaks
17860 (qval < 1E-05)

Base call quality data from DBCLS SRA