Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
Monocytes
MeSH Description
Large, phagocytic mononuclear leukocytes produced in the vertebrate BONE MARROW and released into the BLOOD; contain a large, oval or somewhat indented nucleus surrounded by voluminous cytoplasm and numerous organelles.

Attributes by original data submitter

Sample

source_name
Monocytes
growth protocol
24hrs Beta glucan treated and than cultured in RPMI till day7
sample type
Antibody H3K4me3(Diagenode, Cat No. pAb-003-050, Lot No. A.3152-001P)
chip antibody
H3K4me3
chip antibody manufacturer
Diagenode
cell type
primary monocyte

Sequenced DNA Library

library_name
GSM846035: H3K4me3 BG duplo ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
29299461
Reads aligned (%)
94.0
Duplicates removed (%)
63.1
Number of peaks
19486 (qval < 1E-05)

hg19

Number of total reads
29299461
Reads aligned (%)
93.3
Duplicates removed (%)
63.9
Number of peaks
19487 (qval < 1E-05)

Base call quality data from DBCLS SRA