ChIP-Atlas: SRX110459

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Embryonic fibroblast
Cell type: 3T3-L1
Tissue: Embryo
Cell Type: Fibroblast

Attributes by original data submitter

Sample

source_name: 3T3-L1 cells (ATCC #CL-173)
epitope: none
treatment: none
antibody: none

Sequenced DNA Library

library_name: GSM841627: input
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads: 124413380
Reads aligned (%): 92.4
Duplicates removed (%): 26.3
Number of peaks: 1005 (qval < 1E-05)

mm9

Number of total reads: 124413380
Reads aligned (%): 92.2
Duplicates removed (%): 26.3
Number of peaks: 1121 (qval < 1E-05)

Base call quality data from DBCLS SRA