Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AFF4

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
AFF4_ChIP-seq
cell line
HEK293T
cell type
human embryonic kidney cells
chip antibody
AFF4 antibody [Lin et al. 2010]

Sequenced DNA Library

library_name
GSM841736: AFF4_ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
37275221
Reads aligned (%)
57.7
Duplicates removed (%)
41.2
Number of peaks
1027 (qval < 1E-05)

hg38

Number of total reads
37275221
Reads aligned (%)
59.5
Duplicates removed (%)
39.8
Number of peaks
758 (qval < 1E-05)

Base call quality data from DBCLS SRA