SRX110217
GSM841409: input DNA for H3K4me3 ChIP; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic brains
NA
NA

Attributes by original data submitter

Sample

source_name
input DNA for H3K4me3 ChIP
strain
CD1
develepmental stage
E11.5
tissue
forebrain
chip antibody
None

Sequenced DNA Library

library_name
GSM841409: input DNA for H3K4me3 ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
12547506
Reads aligned (%)
51.8
Duplicates removed (%)
21.8
Number of peaks
118 (qval < 1E-05)

mm9

Number of total reads
12547506
Reads aligned (%)
51.8
Duplicates removed (%)
21.8
Number of peaks
106 (qval < 1E-05)

Base call quality data from DBCLS SRA