Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
iPSC-derived NSCs bearing homozygous LRRK2(G2019S) mutation at passage 15
cell type
NSCs
ChIP
H3K4me3

Sequenced DNA Library

library_name
GSM841176: LK2(GS/GS)-ipsNSC(p15)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
40310421
Reads aligned (%)
89.1
Duplicates removed (%)
44.5
Number of peaks
23891 (qval < 1E-05)

hg19

Number of total reads
40310421
Reads aligned (%)
88.8
Duplicates removed (%)
45.0
Number of peaks
23931 (qval < 1E-05)

Base call quality data from DBCLS SRA