SRX110017
GSM841173: LK2(+/+)-ipsNSC(p10); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
wild-type iPSC-derived NSCs at passage 10
cell type
NSCs
ChIP
H3K4me3

Sequenced DNA Library

library_name
GSM841173: LK2(+/+)-ipsNSC(p10)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30004228
Reads aligned (%)
93.7
Duplicates removed (%)
22.8
Number of peaks
19802 (qval < 1E-05)

hg19

Number of total reads
30004228
Reads aligned (%)
93.1
Duplicates removed (%)
23.8
Number of peaks
19880 (qval < 1E-05)

Base call quality data from DBCLS SRA