SRX1098174
GSM1824410: Astromal Input H3K9ac cont; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pancreas
Cell type
MIA Paca-2
Primary Tissue
Pancreas
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
MIA PaCa-2 cells
cell line
MIA PaCa-2
cell type
pancreatic tumor cells
chip antibody
input
treatment
astromal

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard Illumina DNA library construction

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
5519879
Reads aligned (%)
96.4
Duplicates removed (%)
1.4
Number of peaks
102 (qval < 1E-05)

hg19

Number of total reads
5519879
Reads aligned (%)
95.6
Duplicates removed (%)
2.4
Number of peaks
327 (qval < 1E-05)

Base call quality data from DBCLS SRA