Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Neural

Cell type

White Matter

MeSH Description

The region of CENTRAL NERVOUS SYSTEM that appears lighter in color than the other type, GRAY MATTER. It mainly consists of MYELINATED NERVE FIBERS and contains few neuronal cell bodies or DENDRITES.

Sample

source_name

Human female white matter tissue

tissue

White matter

gender

female

age

68

Cause of death

Myocardial decompensation with sepsis

postmortem delay

4.2 hrs

experiment type

ChIP-Seq

chip antibody

H3K4me3 (Millipore 07-473)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Crosslink, Lyse and Immunoprecipitate Illumina Truseq DNA library protocol

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

18776840

Reads aligned (%)

97.6

Duplicates removed (%)

13.6

Number of peaks

26737 (qval < 1E-05)

hg19

Number of total reads

18776840

Reads aligned (%)

96.5

Duplicates removed (%)

15.2

Number of peaks

26591 (qval < 1E-05)