Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Neural

Cell type

Putamen

MeSH Description

The largest and most lateral of the BASAL GANGLIA lying between the lateral medullary lamina of the GLOBUS PALLIDUS and the EXTERNAL CAPSULE. It is part of the neostriatum and forms part of the LENTIFORM NUCLEUS along with the GLOBUS PALLIDUS.

Sample

source_name

Human female putamen tissue

tissue

Putamen

gender

female

age

68

Cause of death

Myocardial decompensation with sepsis

postmortem delay

4.2 hrs

experiment type

ChIP-Seq

chip antibody

H3K4me3 (Millipore 07-473)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Crosslink, Lyse and Immunoprecipitate Illumina Truseq DNA library protocol

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

18189860

Reads aligned (%)

93.8

Duplicates removed (%)

15.0

Number of peaks

32477 (qval < 1E-05)

hg19

Number of total reads

18189860

Reads aligned (%)

93.6

Duplicates removed (%)

15.2

Number of peaks

32438 (qval < 1E-05)