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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me3
wikigenes
PDBj
CellType: Precentral gyrus
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1096825
GSM1821389: H3K4me3 Human Brain PrecentralGyrus HS1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me3
Cell type
Cell type Class
Neural
Cell type
Precentral gyrus
NA
NA
Attributes by original data submitter
Sample
source_name
Human female precentral gyrus tissue
tissue
Precentral gyrus
gender
female
age
68
Cause of death
Myocardial decompensation with sepsis
postmortem delay
4.2 hrs
experiment type
ChIP-Seq
chip antibody
H3K4me3 (Millipore 07-473)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Crosslink, Lyse and Immunoprecipitate Illumina Truseq DNA library protocol
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
15986875
Reads aligned (%)
97.6
Duplicates removed (%)
41.9
Number of peaks
13441 (qval < 1E-05)
hg19
Number of total reads
15986875
Reads aligned (%)
95.3
Duplicates removed (%)
46.6
Number of peaks
13432 (qval < 1E-05)
Base call quality data from
DBCLS SRA