Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Neural

Cell type

Cerebellum

MeSH Description

The part of brain that lies behind the BRAIN STEM in the posterior base of skull (CRANIAL FOSSA, POSTERIOR). It is also known as the "little brain" with convolutions similar to those of CEREBRAL CORTEX, inner white matter, and deep cerebellar nuclei. Its function is to coordinate voluntary movements, maintain balance, and learn motor skills.

Sample

source_name

Human female cerebellum tissue

tissue

Cerebellum

gender

female

age

68

Cause of death

Myocardial decompensation with sepsis

postmortem delay

4.2 hrs

experiment type

ChIP-Seq

chip antibody

H3K4me3 (Millipore 07-473)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Crosslink, Lyse and Immunoprecipitate Illumina Truseq DNA library protocol

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

13444618

Reads aligned (%)

98.4

Duplicates removed (%)

11.1

Number of peaks

24398 (qval < 1E-05)

hg19

Number of total reads

13444618

Reads aligned (%)

98.2

Duplicates removed (%)

11.3

Number of peaks

24403 (qval < 1E-05)