SRX109484
GSM838675: hGBM1 + Dox + Arvanil + BMP7 ATF3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ATF3

Cell type

Cell type Class
Neural
Cell type
GBM1-HAM
Primary Tissue
Brain
Tissue Diagnosis
Glioblastoma

Attributes by original data submitter

Sample

source_name
hGBM1 + Dox + Arvanil + BMP7 ATF3
cell type
Glioblastoma Multiforme stem like
genotype
Multiple genetic aberrations
chip antibody
anti-ATF3
treatment
Dox + Arvanil + BMP7
chip antibody manufacturer
Abcam

Sequenced DNA Library

library_name
GSM838675: hGBM1 + Dox + Arvanil + BMP7 ATF3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
13714227
Reads aligned (%)
92.6
Duplicates removed (%)
64.5
Number of peaks
15429 (qval < 1E-05)

hg19

Number of total reads
13714227
Reads aligned (%)
92.1
Duplicates removed (%)
65.5
Number of peaks
15475 (qval < 1E-05)

Base call quality data from DBCLS SRA