SRX109482
GSM838673: hGBM 5 BMI1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BMI1

Cell type

Cell type Class
Neural
Cell type
GBM1-HAM
Primary Tissue
Brain
Tissue Diagnosis
Glioblastoma

Attributes by original data submitter

Sample

source_name
hGBM 5 BMI1
cell type
Glioblastoma Multiforme stem like
genotype
Multiple genetic aberrations
chip antibody
anti-BMI1
chip antibody manufacturers
Millipore, Abcam, Abnova

Sequenced DNA Library

library_name
GSM838673: hGBM 5 BMI1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
62287983
Reads aligned (%)
88.0
Duplicates removed (%)
46.1
Number of peaks
1675 (qval < 1E-05)

hg19

Number of total reads
62287983
Reads aligned (%)
87.2
Duplicates removed (%)
47.2
Number of peaks
1287 (qval < 1E-05)

Base call quality data from DBCLS SRA