SRX109481
GSM838672: hGBM 1 Input (BMI1); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
GBM1-HAM
Primary Tissue
Brain
Tissue Diagnosis
Glioblastoma

Attributes by original data submitter

Sample

source_name
hGBM 1 INPUT (BMI1)
cell type
Glioblastoma Multiforme stem like
genotype
Multiple genetic aberrations
chip antibody
none

Sequenced DNA Library

library_name
GSM838672: hGBM 1 Input (BMI1)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
8698223
Reads aligned (%)
91.7
Duplicates removed (%)
32.9
Number of peaks
401 (qval < 1E-05)

hg19

Number of total reads
8698223
Reads aligned (%)
91.1
Duplicates removed (%)
33.8
Number of peaks
517 (qval < 1E-05)

Base call quality data from DBCLS SRA