Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BMI1

Cell type

Cell type Class
Neural
Cell type
GBM1-HAM
Primary Tissue
Brain
Tissue Diagnosis
Glioblastoma

Attributes by original data submitter

Sample

source_name
hGBM 1 BMI1 REP 2
cell type
Glioblastoma Multiforme stem like
genotype
Multiple genetic aberrations
chip antibody
anti-BMI1
chip antibody manufacturers
Millipore, Abcam, Abnova

Sequenced DNA Library

library_name
GSM838671: hGBM 1 BMI1 REP 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
93600705
Reads aligned (%)
30.6
Duplicates removed (%)
61.1
Number of peaks
1205 (qval < 1E-05)

hg38

Number of total reads
93600705
Reads aligned (%)
31.8
Duplicates removed (%)
60.0
Number of peaks
2092 (qval < 1E-05)

Base call quality data from DBCLS SRA