SRX109479
GSM838670: hGBM 1 BMI1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BMI1

Cell type

Cell type Class
Neural
Cell type
GBM1-HAM
Primary Tissue
Brain
Tissue Diagnosis
Glioblastoma

Attributes by original data submitter

Sample

source_name
hGBM 1 BMI1
cell type
Glioblastoma Multiforme stem like
genotype
Multiple genetic aberrations
chip antibody
anti-BMI1
chip antibody manufacturers
Millipore, Abcam, Abnova

Sequenced DNA Library

library_name
GSM838670: hGBM 1 BMI1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
11162716
Reads aligned (%)
98.8
Duplicates removed (%)
2.3
Number of peaks
303 (qval < 1E-05)

hg19

Number of total reads
11162716
Reads aligned (%)
98.2
Duplicates removed (%)
3.1
Number of peaks
516 (qval < 1E-05)

Base call quality data from DBCLS SRA