SRX109477
GSM838668: hNPCs BMI1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BMI1

Cell type

Cell type Class
Neural
Cell type
Fetal neural progenitor cells
NA
NA

Attributes by original data submitter

Sample

source_name
hNPCs BMI1
cell type
Foetal Neural Progenitor cells
genotype
Normal; diploid
chip antibody
anti-BMI1
chip antibody manufacturers
Millipore, Abcam, Abnova

Sequenced DNA Library

library_name
GSM838668: hNPCs BMI1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
85679851
Reads aligned (%)
77.1
Duplicates removed (%)
63.0
Number of peaks
1452 (qval < 1E-05)

hg19

Number of total reads
85679851
Reads aligned (%)
76.0
Duplicates removed (%)
63.9
Number of peaks
865 (qval < 1E-05)

Base call quality data from DBCLS SRA