SRX109476
GSM838667: INK4A/ARF -/- mNPC 2 Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Neural progenitor cells
NA
NA

Attributes by original data submitter

Sample

source_name
INK4A/ARF -/- mNPC 2 Input
cell type
Adult Neural Progenitor cells
genetic background
INK4a/Arf FVB
genotype
INK4A/ARF -/-
chip antibody
none

Sequenced DNA Library

library_name
GSM838667: INK4A/ARF -/- mNPC 2 Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
87899014
Reads aligned (%)
91.4
Duplicates removed (%)
16.6
Number of peaks
837 (qval < 1E-05)

mm9

Number of total reads
87899014
Reads aligned (%)
91.3
Duplicates removed (%)
16.6
Number of peaks
864 (qval < 1E-05)

Base call quality data from DBCLS SRA