SRX109449
GSM838936: LOXIMVI H3K4me3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Epidermis
Cell type
LOX-IMVI
Primary Tissue
Skin
Tissue Diagnosis
Melanoma

Attributes by original data submitter

Sample

source_name
melanoma cell line LOXIMVI
gender
male
age
58 years adult
tissue
malignant melanoma, lymph node metastasis
cell line
melanoma cell line LOXIMVI
chip antibody
H3K4me3

Sequenced DNA Library

library_name
GSM838936: LOXIMVI_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12293978
Reads aligned (%)
97.9
Duplicates removed (%)
9.0
Number of peaks
3730 (qval < 1E-05)

hg19

Number of total reads
12293978
Reads aligned (%)
96.9
Duplicates removed (%)
10.1
Number of peaks
3849 (qval < 1E-05)

Base call quality data from DBCLS SRA