Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Epidermis
Cell type
Melanocytes
MeSH Description
Mammalian pigment cells that produce MELANINS, pigments found mainly in the EPIDERMIS, but also in the eyes and the hair, by a process called melanogenesis. Coloration can be altered by the number of melanocytes or the amount of pigment produced and stored in the organelles called MELANOSOMES. The large non-mammalian melanin-containing cells are called MELANOPHORES.

Attributes by original data submitter

Sample

source_name
Human Epidermal Melanocytes, neonatal, lightly pigmented donor (HEMn-LP)
gender
male
age
neonatal
tissue
normal skin
cell type
HEMn melanocytes
chip antibody
H3K4me3

Sequenced DNA Library

library_name
GSM838927: HEMn_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
25450458
Reads aligned (%)
98.9
Duplicates removed (%)
12.9
Number of peaks
6174 (qval < 1E-05)

hg19

Number of total reads
25450458
Reads aligned (%)
97.7
Duplicates removed (%)
15.2
Number of peaks
6142 (qval < 1E-05)

Base call quality data from DBCLS SRA