Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Macrophages
MeSH Description
The relatively long-lived phagocytic cell of mammalian tissues that are derived from blood MONOCYTES. Main types are PERITONEAL MACROPHAGES; ALVEOLAR MACROPHAGES; HISTIOCYTES; KUPFFER CELLS of the liver; and OSTEOCLASTS. They may further differentiate within chronic inflammatory lesions to EPITHELIOID CELLS or may fuse to form FOREIGN BODY GIANT CELLS or LANGHANS GIANT CELLS. (from The Dictionary of Cell Biology, Lackie and Dow, 3rd ed.)

Attributes by original data submitter

Sample

source_name
bone marrow macrophages
genotype
Ikbke+/+
cell type
Bone marrow macrophages
chip antibody
none
treatment
IFNγ for 6 hour
genetic background
C58BL/6

Sequenced DNA Library

library_name
GSM838684: WT Reverse crosslink 6hr IFNg BMM
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
29239437
Reads aligned (%)
73.6
Duplicates removed (%)
6.1
Number of peaks
521 (qval < 1E-05)

mm9

Number of total reads
29239437
Reads aligned (%)
73.5
Duplicates removed (%)
6.2
Number of peaks
665 (qval < 1E-05)

Base call quality data from DBCLS SRA