Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
ALL-SIL
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
ALL-SIL cell line
cell line
ALL-SIL
cell type
T-cell acute lymphoblastic leukemia (T-ALL) cell line

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was purified by phenol/chloroform extraction, assisted by phase lock gel tubes (5Prime). library preparation was performed using the standard Illumina protocol unstranded single end sequencing

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
28516468
Reads aligned (%)
98.2
Duplicates removed (%)
2.4
Number of peaks
1206 (qval < 1E-05)

hg19

Number of total reads
28516468
Reads aligned (%)
96.9
Duplicates removed (%)
4.0
Number of peaks
1182 (qval < 1E-05)

Base call quality data from DBCLS SRA