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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Irf8
wikigenes
PDBj
CellType: B cells
ATCC
MeSH
RIKEN BRC
SRX1091124
GSM1816692: IRF8 GCBcell; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Irf8
Cell type
Cell type Class
Blood
Cell type
B cells
NA
NA
Attributes by original data submitter
Sample
source_name
GC B cells
cell type
GC B cells
strain
C57BL/6
culture time
in vivo fresh cell
chip antibody
anti-IRF8 (Santa Cruz, C-19)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody Libraries were prepared for sequencing usingTruSeq DNA LT Sample Prep Kit with standard protocols
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
56753118
Reads aligned (%)
82.9
Duplicates removed (%)
79.1
Number of peaks
2285 (qval < 1E-05)
mm9
Number of total reads
56753118
Reads aligned (%)
82.7
Duplicates removed (%)
79.2
Number of peaks
2231 (qval < 1E-05)
Base call quality data from
DBCLS SRA