Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
HPB-ALL
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
HPB-ALL
cell line
leukemia cell line HPB-ALL
chip antibody
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Library preapred according to Illumina's instructions

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
31937267
Reads aligned (%)
94.6
Duplicates removed (%)
2.4
Number of peaks
958 (qval < 1E-05)

hg19

Number of total reads
31937267
Reads aligned (%)
93.8
Duplicates removed (%)
3.8
Number of peaks
1129 (qval < 1E-05)

Base call quality data from DBCLS SRA