SRX1085070
GSM1812040: HPB-ALL-KDM2B; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM2B

Cell type

Cell type Class
Blood
Cell type
HPB-ALL
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
HPB-ALL
cell line
leukemia cell line HPB-ALL
chip antibody
anti-KDM2B (Millipore, catalog# 09-864)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Library preapred according to Illumina's instructions

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
47274551
Reads aligned (%)
93.8
Duplicates removed (%)
6.9
Number of peaks
1136 (qval < 1E-05)

hg19

Number of total reads
47274551
Reads aligned (%)
93.0
Duplicates removed (%)
8.4
Number of peaks
1137 (qval < 1E-05)

Base call quality data from DBCLS SRA