Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Breast

Cell type

MDA-MB-231

Primary Tissue

Breast

Site of Extraction

Effusion, Pleural

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

breast cancer cells_MDA231_input

cell line

MDA-MB-231

cell type

breast cancer cells

chip antibody

none

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates were clarified from sonicated nuclei and LMTK3-DNA complexes were isolated with antibody. libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

27761850

Reads aligned (%)

98.2

Duplicates removed (%)

2.4

Number of peaks

805 (qval < 1E-05)

hg19

Number of total reads

27761850

Reads aligned (%)

97.5

Duplicates removed (%)

3.6

Number of peaks

969 (qval < 1E-05)