Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Breast

Cell type

MCF-7

Primary Tissue

Breast

Site of Extraction

Pleura

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

breast cancer cells_MCF7_input

cell line

MCF7

cell type

breast cancer cells

chip antibody

none

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates were clarified from sonicated nuclei and LMTK3-DNA complexes were isolated with antibody. libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

31030645

Reads aligned (%)

98.5

Duplicates removed (%)

2.6

Number of peaks

776 (qval < 1E-05)

hg19

Number of total reads

31030645

Reads aligned (%)

97.9

Duplicates removed (%)

3.8

Number of peaks

887 (qval < 1E-05)