Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: LMTK3
wikigenes
PDBj
CellType: MDA-MB-231
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1076936
GSM1726362: LMTK3 ChIP MDA231; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
LMTK3
Cell type
Cell type Class
Breast
Cell type
MDA-MB-231
Primary Tissue
Breast
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
breast cancer cells_LMTK3_ChIP_MDA231
cell line
MDA-MB-231
cell type
breast cancer cells
chip antibody
LMTK3 monoclonal antibody (M02), clone 2H6 (Abnova, H00114783-M02)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and LMTK3-DNA complexes were isolated with antibody. libraries were prepared for sequencing using standard Illumina protocols
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
25940729
Reads aligned (%)
84.3
Duplicates removed (%)
23.1
Number of peaks
753 (qval < 1E-05)
hg19
Number of total reads
25940729
Reads aligned (%)
83.8
Duplicates removed (%)
24.1
Number of peaks
909 (qval < 1E-05)
Base call quality data from
DBCLS SRA