Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
LMTK3

Cell type

Cell type Class
Breast
Cell type
MDA-MB-231
Primary Tissue
Breast
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
breast cancer cells_LMTK3_ChIP_MDA231
cell line
MDA-MB-231
cell type
breast cancer cells
chip antibody
LMTK3 monoclonal antibody (M02), clone 2H6 (Abnova, H00114783-M02)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and LMTK3-DNA complexes were isolated with antibody. libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
25940729
Reads aligned (%)
63.6
Duplicates removed (%)
24.1
Number of peaks
909 (qval < 1E-05)

hg38

Number of total reads
25940729
Reads aligned (%)
64.8
Duplicates removed (%)
23.1
Number of peaks
753 (qval < 1E-05)

Base call quality data from DBCLS SRA