Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
LMTK3

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
breast cancer cells_LMTK3_ChIP_MCF7
cell line
MCF7
cell type
breast cancer cells
chip antibody
LMTK3 monoclonal antibody (M02), clone 2H6 (Abnova, H00114783-M02)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and LMTK3-DNA complexes were isolated with antibody. libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
88559310
Reads aligned (%)
72.5
Duplicates removed (%)
18.3
Number of peaks
2267 (qval < 1E-05)

hg38

Number of total reads
88559310
Reads aligned (%)
74.2
Duplicates removed (%)
17.0
Number of peaks
2284 (qval < 1E-05)

Base call quality data from DBCLS SRA