Antigen

Antigen Class

TFs and others

Antigen

LMTK3

Cell type

Cell type Class

Breast

Cell type

MCF-7

Primary Tissue

Breast

Site of Extraction

Pleura

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

breast cancer cells_LMTK3_ChIP_MCF7

cell line

MCF7

cell type

breast cancer cells

chip antibody

LMTK3 monoclonal antibody (M02), clone 2H6 (Abnova, H00114783-M02)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates were clarified from sonicated nuclei and LMTK3-DNA complexes were isolated with antibody. libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg19

Number of total reads

88559310

Reads aligned (%)

88.8

Duplicates removed (%)

18.3

Number of peaks

2267 (qval < 1E-05)

hg38

Number of total reads

88559310

Reads aligned (%)

89.3

Duplicates removed (%)

17.0

Number of peaks

2284 (qval < 1E-05)