SRX107412
GSM838401: Input ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Prostate
Cell type
C4-2
Tissue
Prostate
Cell Type
Epithelial
Disease
Prostate Cancer

Attributes by original data submitter

Sample

source_name
C4-2B
chip antibody
none - input DNA
cell line
C4-2B

Sequenced DNA Library

library_name
GSM838401: Input ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
98165959
Reads aligned (%)
99.3
Duplicates removed (%)
6.9
Number of peaks
1766 (qval < 1E-05)

hg19

Number of total reads
98165959
Reads aligned (%)
98.7
Duplicates removed (%)
7.9
Number of peaks
1659 (qval < 1E-05)

Base call quality data from DBCLS SRA