SRX107411
GSM838400: Runx2 ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RUNX2

Cell type

Cell type Class
Prostate
Cell type
C4-2
Tissue
Prostate
Cell Type
Epithelial
Disease
Prostate Cancer

Attributes by original data submitter

Sample

source_name
C4-2B
chip antibody
Runx2 Flag tagged
cell line
C4-2B
chip antibody manufacturer
Sigma

Sequenced DNA Library

library_name
GSM838400: Runx2 ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
92795549
Reads aligned (%)
77.6
Duplicates removed (%)
77.6
Number of peaks
28369 (qval < 1E-05)

hg19

Number of total reads
92795549
Reads aligned (%)
77.1
Duplicates removed (%)
78.6
Number of peaks
28165 (qval < 1E-05)

Base call quality data from DBCLS SRA