SRX107368
GSM811213: ERa e2 5k LinDA rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
H3396
NA
NA

Attributes by original data submitter

Sample

source_name
ERa e2 5k LinDA
cell type
breast cancer cells
cell line
H3396
comment
chromatin IP against ER-alpha (Santa Cruz Biotech: HC20 )
chip antibody
ER-alpha
chip antibody manufacturer
Santa Cruz
amplification
5k LinDA
treatment
E2

Sequenced DNA Library

library_name
GSM811213: ERa e2 5k LinDA rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
36568662
Reads aligned (%)
70.7
Duplicates removed (%)
26.6
Number of peaks
7492 (qval < 1E-05)

hg19

Number of total reads
36568662
Reads aligned (%)
70.1
Duplicates removed (%)
28.0
Number of peaks
7620 (qval < 1E-05)

Base call quality data from DBCLS SRA