Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
H3396
NA
NA

Attributes by original data submitter

Sample

source_name
ERa e2 100k LinDA
cell type
breast cancer cells
cell line
H3396
comment
chromatin IP against ER-alpha (Santa Cruz Biotech: HC20 )
chip antibody
ER-alpha
chip antibody manufacturer
Santa Cruz
amplification
100k LinDA
treatment
E2

Sequenced DNA Library

library_name
GSM811209: ERa e2 100k LinDA rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
26557726
Reads aligned (%)
61.2
Duplicates removed (%)
26.1
Number of peaks
4480 (qval < 1E-05)

hg38

Number of total reads
26557726
Reads aligned (%)
62.9
Duplicates removed (%)
24.6
Number of peaks
4338 (qval < 1E-05)

Base call quality data from DBCLS SRA