SRX107363
GSM811208: ERa e2 100k LinDA rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
H3396
NA
NA

Attributes by original data submitter

Sample

source_name
ERa e2 100k LinDA
cell type
breast cancer cells
cell line
H3396
comment
chromatin IP against ER-alpha (Santa Cruz Biotech: HC20 )
chip antibody
ER-alpha
chip antibody manufacturer
Santa Cruz
amplification
100k LinDA
treatment
E2

Sequenced DNA Library

library_name
GSM811208: ERa e2 100k LinDA rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26091833
Reads aligned (%)
87.8
Duplicates removed (%)
25.7
Number of peaks
6910 (qval < 1E-05)

hg19

Number of total reads
26091833
Reads aligned (%)
86.9
Duplicates removed (%)
26.8
Number of peaks
7043 (qval < 1E-05)

Base call quality data from DBCLS SRA