SRX107362
GSM811207: H3K4me3 e2 1k LinDA rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Breast
Cell type
H3396
NA
NA

Attributes by original data submitter

Sample

source_name
H3K4me3 e2 1k LinDA
cell type
breast cancer cells
cell line
H3396
comment
chromatin IP against H3K4me3 ( Abcam: AB1012 )
chip antibody
H3K4me3
chip antibody manufacturer
Abcam
amplification
1k LinDA
treatment
E2

Sequenced DNA Library

library_name
GSM811207: H3K4me3 e2 1k LinDA rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22141603
Reads aligned (%)
78.4
Duplicates removed (%)
22.2
Number of peaks
3235 (qval < 1E-05)

hg19

Number of total reads
22141603
Reads aligned (%)
77.6
Duplicates removed (%)
24.0
Number of peaks
3375 (qval < 1E-05)

Base call quality data from DBCLS SRA