SRX107321
GSM836458: CTCF/activated B cells/wt

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse Mature B cells, Spleen, in vitro LPS/IL-4 activated
strain
C57BL/6J
cell type
in vitro activated mouse B cells
source
spleen
isolation
CD43 negative magnetic beads selection
chip antibody
anti-CTCF
vendor
07-729 Millipore rabbit polyclonal ab
chip target
CTCF

Sequenced DNA Library

library_name
GSM836458: CTCF/activated B cells/wt
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
33750386
Reads aligned (%)
68.3
Duplicates removed (%)
22.4
Number of peaks
54322 (qval < 1E-05)

mm9

Number of total reads
33750386
Reads aligned (%)
68.2
Duplicates removed (%)
22.5
Number of peaks
54335 (qval < 1E-05)

Base call quality data from DBCLS SRA