SRX107307
GSM838006: LMO1 ChIP-seq Jurkat 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
LMO1

Cell type

Cell type Class
Blood
Cell type
Jurkat (Clone E6-1)
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
T-ALL cell line
chip antibody
LMO1
antibody catalog number
Santa Cruz SC-10494
antibody manufacturer
Santa Cruz
cell line
Jurkat E6-1

Sequenced DNA Library

library_name
GSM838006: LMO1 ChIP-seq Jurkat 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16622170
Reads aligned (%)
44.3
Duplicates removed (%)
36.2
Number of peaks
69 (qval < 1E-05)

hg19

Number of total reads
16622170
Reads aligned (%)
43.8
Duplicates removed (%)
37.6
Number of peaks
236 (qval < 1E-05)

Base call quality data from DBCLS SRA