SRX107305
GSM838004: Input WCE ChIP-seq CCRF-CEM 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CCRF-CEM
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
T-ALL cell line
chip antibody
None
antibody catalog number
None WCE
cell line
CCRF-CEM

Sequenced DNA Library

library_name
GSM838004: Input WCE ChIP-seq CCRF-CEM 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
11526597
Reads aligned (%)
43.9
Duplicates removed (%)
16.3
Number of peaks
115 (qval < 1E-05)

hg19

Number of total reads
11526597
Reads aligned (%)
43.1
Duplicates removed (%)
16.7
Number of peaks
126 (qval < 1E-05)

Base call quality data from DBCLS SRA