Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RUNX1

Cell type

Cell type Class
Blood
Cell type
CCRF-CEM
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
T-ALL cell line
chip antibody
RUNX1
antibody catalog number
Santa Cruz SC-8563
antibody manufacturer
Santa Cruz
cell line
CCRF-CEM

Sequenced DNA Library

library_name
GSM837995: RUNX1 ChIP-seq CCRF-CEM 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
17313403
Reads aligned (%)
38.0
Duplicates removed (%)
55.2
Number of peaks
690 (qval < 1E-05)

hg38

Number of total reads
17313403
Reads aligned (%)
39.9
Duplicates removed (%)
53.4
Number of peaks
354 (qval < 1E-05)

Base call quality data from DBCLS SRA