SRX107295
GSM837994: RUNX1 ChIP-seq CCRF-CEM 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RUNX1

Cell type

Cell type Class
Blood
Cell type
CCRF-CEM
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
T-ALL cell line
chip antibody
RUNX1
antibody catalog number
Santa Cruz SC-8563
antibody manufacturer
Santa Cruz
cell line
CCRF-CEM

Sequenced DNA Library

library_name
GSM837994: RUNX1 ChIP-seq CCRF-CEM 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
10930955
Reads aligned (%)
7.6
Duplicates removed (%)
91.4
Number of peaks
36 (qval < 1E-05)

hg38

Number of total reads
10930955
Reads aligned (%)
8.9
Duplicates removed (%)
89.9
Number of peaks
21 (qval < 1E-05)

Base call quality data from DBCLS SRA