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For hg19
BigWig
Peak-call (q < 1E-05)
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For hg38
BigWig
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Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RUNX1
wikigenes
PDBj
CellType: CCRF-CEM
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX107295
GSM837994: RUNX1 ChIP-seq CCRF-CEM 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
RUNX1
Cell type
Cell type Class
Blood
Cell type
CCRF-CEM
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic
Attributes by original data submitter
Sample
source_name
T-ALL cell line
chip antibody
RUNX1
antibody catalog number
Santa Cruz SC-8563
antibody manufacturer
Santa Cruz
cell line
CCRF-CEM
Sequenced DNA Library
library_name
GSM837994: RUNX1 ChIP-seq CCRF-CEM 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
10930955
Reads aligned (%)
7.6
Duplicates removed (%)
91.4
Number of peaks
36 (qval < 1E-05)
hg38
Number of total reads
10930955
Reads aligned (%)
8.9
Duplicates removed (%)
89.9
Number of peaks
21 (qval < 1E-05)
Base call quality data from
DBCLS SRA