SRX107293
GSM837992: LMO2 ChIP-seq CCRF-CEM 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
LMO2

Cell type

Cell type Class
Blood
Cell type
CCRF-CEM
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
T-ALL cell line
chip antibody
LMO2
antibody catalog number
R&D Systems AF2726
antibody manufacturer
R&D Systems
cell line
CCRF-CEM

Sequenced DNA Library

library_name
GSM837992: LMO2 ChIP-seq CCRF-CEM 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14971703
Reads aligned (%)
87.0
Duplicates removed (%)
77.5
Number of peaks
432 (qval < 1E-05)

hg19

Number of total reads
14971703
Reads aligned (%)
86.0
Duplicates removed (%)
79.6
Number of peaks
449 (qval < 1E-05)

Base call quality data from DBCLS SRA