SRX107291
GSM837990: Input WCE ChIP-seq Prima2 T-ALL 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
T-ALL
NA
NA

Attributes by original data submitter

Sample

source_name
T-ALL primagraft
chip antibody
None
antibody catalog number
None WCE
sample type
T-ALL primagraft 05-261

Sequenced DNA Library

library_name
GSM837990: Input WCE ChIP-seq Prima2 T-ALL 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19151920
Reads aligned (%)
70.2
Duplicates removed (%)
83.6
Number of peaks
112 (qval < 1E-05)

hg19

Number of total reads
19151920
Reads aligned (%)
69.8
Duplicates removed (%)
84.5
Number of peaks
118 (qval < 1E-05)

Base call quality data from DBCLS SRA