SRX107287
GSM837986: GATA3 ChIP-seq CCRF-CEM

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA3

Cell type

Cell type Class
Blood
Cell type
CCRF-CEM
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
T-ALL cell line
chip antibody
GATA3
antibody catalog number
Santa Cruz SC-22206
antibody manufacturer
Santa Cruz
cell line
CCRF-CEM

Sequenced DNA Library

library_name
GSM837986: GATA3 ChIP-seq CCRF-CEM
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
13947260
Reads aligned (%)
76.7
Duplicates removed (%)
73.6
Number of peaks
249 (qval < 1E-05)

hg19

Number of total reads
13947260
Reads aligned (%)
75.8
Duplicates removed (%)
75.6
Number of peaks
282 (qval < 1E-05)

Base call quality data from DBCLS SRA