Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
DUX4

Cell type

Cell type Class
Muscle
Cell type
Myoblasts
MeSH Description
Embryonic (precursor) cells of the myogenic lineage that develop from the MESODERM. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes (MYOCYTES, SKELETAL; MYOCYTES, CARDIAC; MYOCYTES, SMOOTH MUSCLE).

Attributes by original data submitter

Sample

source_name
lenti-DUX4-fl
chip antibody
Combined anti-DUX4 C-terminus rabbit polyclonal antibodies MO488 and MO489
treatment
myoblasts transduced with lentivirus carrying DUX4
cell type
human myoblasts

Sequenced DNA Library

library_name
GSM837613: lenti-DUX4-fl
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
81362546
Reads aligned (%)
83.6
Duplicates removed (%)
11.7
Number of peaks
98382 (qval < 1E-05)

hg38

Number of total reads
81362546
Reads aligned (%)
86.1
Duplicates removed (%)
9.8
Number of peaks
99976 (qval < 1E-05)

Base call quality data from DBCLS SRA