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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: MDA-MB-453
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1070159
GSM1717859: MDA-MB453 IgG; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Breast
Cell type
MDA-MB-453
Primary Tissue
Breast
Site of Extraction
Effusion, Pericardial
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
source_name
MDA-MB453_IgG
origin
Metastatic carcinoma of the breast
cell line
MDA-MB453 breast cancer cell line
treated with
10 nM R1881 for 2hrs
chip antibody
IgG (sc-2027)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were derived from sonicated nuclei and AR- and PIAS1-DNA complexes were isolated with antibody. ChIP-seq libraries were prepared for sequencing using standard Illumina protocol, as utilized at the Functional Genomics Unit, Helsinki, Finland.
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
38320791
Reads aligned (%)
95.4
Duplicates removed (%)
9.8
Number of peaks
913 (qval < 1E-05)
hg19
Number of total reads
38320791
Reads aligned (%)
94.7
Duplicates removed (%)
11.0
Number of peaks
1115 (qval < 1E-05)
Base call quality data from
DBCLS SRA